Simulations of a single membrane between two walls using a Monte Carlo method
نویسندگان
چکیده
Quantitative theory of interbilayer interactions is essential to interpret x-ray scattering data and to elucidate these interactions for biologically relevant systems. For this purpose Monte Carlo simulations have been performed to obtain pressure P and positional fluctuations s. An alternative method, called Fourier Monte Carlo ~FMC!, that is based on a Fourier representation of the displacement field, is developed and its superiority over the standard method is demonstrated. The FMC method is applied to simulating a single membrane between two hard walls, which models a stack of lipid bilayer membranes with nonharmonic interactions. Finite-size scaling is demonstrated and used to obtain accurate values for P and s in the limit of a large continuous membrane. The results are compared with perturbation theory approximations, and numerical differences are found in the nonharmonic case. Therefore the FMC method, rather than the approximations, should be used for establishing the connection between model potentials and observable quantities, as well as for pure modeling purposes. @S1063-651X~98!10107-1#
منابع مشابه
Energy study at different solvents for potassium Channel Protein by Monte Carlo, Molecular and Langevin Dynamics Simulations
Potassium Channels allow potassium flux and are essential for the generation of electric current acrossexcitable membranes. Potassium Channels are also the targets of various intracellular controlmechanisms; such that the suboptimal regulation of channel function might be related to pathologicalconditions. Realistic studies of ion current in biologic channels present a major challenge for compu...
متن کاملGyration Radius and Energy Study at Different Temperatures for Acetylcholine Receptor Protein in Gas Phase by Monte Carlo, Molecular and Langevin Dynamics Simulations
The determination of gyration radius is a strong research for configuration of a Macromolecule. Italso reflects molecular compactness shape. In this work, to characterize the behavior of theprotein, we observe quantities such as the radius of gyration and the average energy. We studiedthe changes of these factors as a function of temperature for Acetylcholine receptor protein in gasphase with n...
متن کاملTwo and Three Dimensional Monte Carlo Simulation of Magnetite Nanoparticle Based Ferrofluids
We have simulated a magnetite nanoparticle based ferrofluid using Monte Carlo method. Two and three dimensional Monte Carlo simulations have been done using parallel computing technique. The aggregation and rearrangement of nanoparticles embedded in a liquid carrier have been studied in various particle volume fractions. Our simulation results are in complete agreement with the reported experim...
متن کاملMonte Carlo characterization of photoneutrons in the radiation therapy with high energy photons: a Comparison between simplified and full Monte Carlo models
Background: The characteristics of secondary neutrons in a high energy radiation therapy room were studied using the MCNPX Monte Carlo (MC) code. Materials and Methods: Two MC models including a model with full description of head components and a simplified model used in previous studies were implemented for MC simulations. Results: Results showed 4-53% difference between full and wit...
متن کاملPlanar and SPECT Monte Carlo acceleration using a variance reduction technique in I131 imaging
Background: Various variance reduction techniques such as forced detection (FD) have been implemented in Monte Carlo (MC) simulation of nuclear medicine in an effort to decrease the simulation time while keeping accuracy. However most of these techniques still result in very long MC simulation times for being implemented into routine use. Materials and Methods: Convolution-based force...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
عنوان ژورنال:
دوره شماره
صفحات -
تاریخ انتشار 1998